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To represent molecules and states making up the simulation, PGOPHER makes use of a hierarchy of objects. This works rather like a nested directory structure containing files except that each level can only contain certain types of object. These are no particular limits to the number of objects at each level, so that arbitrary combinations of spectra can be constructed, and multiple interacting (perturbing) states can be simulated. To view or edit any of these objects, use the tree view in the Constants window (View, Constants). The topmost object is a
Experimental data used to overlay simulated spectra are also described by a similar, if simpler hierarchy of objects. These can be individually inspected using the tree view in the Overlays window (Overlays, Properties). The topmost object is: